A Parallel Non-Uniform Fast Fourier Transform Library Based on an "Exponential of Semicircle" Kernel

Resource type
Date created
2019-09-19
Authors/Contributors
Abstract
The nonuniform fast Fourier transform (NUFFT) generalizes the FFT to off-grid data. Its many applications include image reconstruction, data analysis, and the numerical solution of differential equations. We present FINUFFT, an efficient parallel library for type 1 (nonuniform to uniform), type 2 (uniform to nonuniform), or type 3 (nonuniform to nonuniform) transforms, in dimensions 1, 2, or 3. It uses minimal RAM, requires no precomputation or plan steps, and has a simple interface to several languages. We perform the expensive spreading/interpolation between nonuniform points and the fine grid via a simple new kernel---the ``exponential of semicircle"" e \beta \surd 1 - x2 in x \in [ - 1, 1]---in a cache-aware load-balanced multithreaded implementation. The deconvolution step requires the Fourier transform of the kernel, for which we propose efficient numerical quadrature. For types 1 and 2, rigorous error bounds asymptotic in the kernel width approach the fastest known exponential rate, namely that of the Kaiser--Bessel kernel. We benchmark against several popular CPU-based libraries, showing favorable speed and memory footprint, especially in three dimensions when high accuracy and/or clustered point distributions are desired.
Document
Published as
Barnett, A.H., Magland, J., & af Klinteberg, L. (2019). A Parallel Nonuniform Fast Fourier Transform Library Based on an "Exponential of Semicircle" Kernel. SIAM Journal on Scientific Computing, 41(5), C479-C504. http://doi.org/10.1137/18M120885X
Publication title
SIAM Journal on Scientific Computing
Document title
A Parallel Nonuniform Fast Fourier Transform Library Based on an "Exponential of Semicircle" Kernel
Date
2019
Volume
41
Issue
5
Publisher DOI
10.1137/18M120885X
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Copyright is held by the author(s).
Scholarly level
Peer reviewed?
Yes
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2019_finufft_sisc.pdf 3.18 MB