Sahinalp, S. Cenk

A Multi-Labeled Tree Dissimilarity Measure for Comparing “Clonal Trees” of Tumor Progression

Characterization of Genome Rearrangements from Tumour Sequencing Data

Computational methods for RNA-RNA interaction prediction

Efficient high throughput sequencing data compression and genotyping methods for clinical environments

Inference of tumor subclonal composition and evolution by the use of single-cell and bulk DNA sequencing data

Integrative Inference of Subclonal Tumour Evolution from Single-Cell and Bulk Sequencing Data

Not All Scale-Free Networks Are Born Equal: The Role of the Seed Graph in PPI Network Evolution

Organization and Evolution of Primate Centromeric DNA from Whole-Genome Shotgun Sequence Data

Robustness of Massively Parallel Sequencing Platforms

Scalable mapping and compression of high throughput genome sequencing data