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Sahinalp, Cenk

Algorithms for structural variation discovery and protein-protein interaction prediction
Computational Discovery of Splicing Events from High-Throughput Omics Data
Computational methods for discovering functional modules from protein interaction networks
deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data
Detecting and characterizing fusions and tandem duplications in acute myeloid leukemia transcriptome assemblies using Barnacle
Detection and characterization of novel structural alterations in transcribed sequences
Lipid: a linear programming approach for isoform detection and abundance estimation
Methods for the Detection of Single Nucleotide Variants and Indels from Cell-Free DNA
Multi-driver gene prioritization based on hitting time
Structural variation discovery: the easy, the hard and the ugly

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