Sahinalp, Cenk

Algorithms for structural variation discovery and protein-protein interaction prediction

Computational Discovery of Splicing Events from High-Throughput Omics Data

Computational methods for discovering functional modules from protein interaction networks

deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data

Detecting and characterizing fusions and tandem duplications in acute myeloid leukemia transcriptome assemblies using Barnacle

Detection and characterization of novel structural alterations in transcribed sequences

Lipid: a linear programming approach for isoform detection and abundance estimation

Methods for the Detection of Single Nucleotide Variants and Indels from Cell-Free DNA

Multi-driver gene prioritization based on hitting time

Structural variation discovery: the easy, the hard and the ugly