ID	Gene	Exon	Directions	"Mean Coverage"	"Barnacle + BWA"	"Barnacle-MM + BWA"	"Barnacle + ABySS-map"	"Barnacle-MM + ABySS-map"	TopHat-Fusion	Notes
fusion76	ACO2 / GTPBP1	exon12 / exon2	5'>3' / 5'>3'	0.128513	N	N	N	N	N	mean coverage below both read-support thresholds
fusion65	DDX17 / EYA2	exon3 / exon9	3'<5' / 5'>3'	0.352315	N	N	N	N	N	mean coverage below both read-support thresholds
fusion82	C20orf12 / IGLV3-26	exon7 / exon2	3'<5' / 5'>3'	0.387036	N	N	N	N	N	mean coverage below both read-support thresholds
fusion22	CARD10 / NOP56	exon3 / exon1	5'>3' / 5'>3'	0.3885	N	N	N	N	N	mean coverage below both read-support thresholds
fusion80	RP11-218C14.2 / TRMT2A	exon4 / exon2	3'<5' / 3'<5'	0.913952	N	N	N	N	N	mean coverage below both read-support thresholds
fusion88	AL139349.1 / PLTP	exon1 / exon7	3'<5' / 3'<5'	1.318704	N	N	N	N	N	mean coverage below both read-support thresholds
fusion94	HAR1B / RANGAP1	exon2 / exon6	3'<5' / 3'<5'	1.433365	N	N	N	N	N	mean coverage below both read-support thresholds
fusion55	C20orf43 / HCK	exon7 / exon2	3'<5' / 3'<5'	1.534207	N	N	N	N	N	mean coverage below both read-support thresholds
fusion30	PI4KAP2 / SREBF2	exon2 / exon1	5'>3' / 5'>3'	1.635248	N	N	N	N	N	mean coverage below both read-support thresholds
fusion60	MAPK12 / RP1-155G6.4	exon3 / exon1	3'<5' / 3'<5'	1.799245	N	N	N	N	N	mean coverage below both read-support thresholds
fusion9	SEMG1 / TRMT2A	pos46 / pos446	3'<5' / 3'<5'	2.756769	N	N	N	N	N	mean coverage below both read-support thresholds
fusion31	C20orf78 / IGLVI-38	exon1 / exon2	3'<5' / 3'<5'	2.863592	N	N	N	N	Y	mean coverage below both read-support thresholds
fusion25	ELMO2 / THOC5	exon5 / exon7	5'>3' / 5'>3'	2.880003	N	N	N	N	N	mean coverage below both read-support thresholds
fusion72	DSTN / PIWIL3	exon1 / exon19	5'>3' / 5'>3'	2.897782	N	N	N	N	Y	mean coverage below both read-support thresholds
fusion35	RP1-63G5.5 / UBE2C	pos405 / pos357	5'>3' / 5'>3'	2.994877	N	N	N	N	N	mean coverage below both read-support thresholds
fusion41	C20orf26 / XXbac-B33L19.10	exon14 / exon1	5'>3' / 5'>3'	3.069921	N	N	Y	Y	Y	mean coverage below Barnacle read-support threshold
fusion99	IL2RB / SLC17A9	exon3 / exon9	3'<5' / 3'<5'	3.355567	N	N	N	N	N	mean coverage below Barnacle read-support threshold
fusion20	CTD-3184A7.4 / PIK3IP1	exon2 / exon2	3'<5' / 3'<5'	3.469444	N	N	N	N	N	mean coverage below Barnacle read-support threshold
fusion93	CD40 / PMEPA1	exon2 / exon4	5'>3' / 5'>3'	3.983142	N	N	N	N	N	mean coverage below Barnacle read-support threshold
fusion47	C20orf199 / KCNQ2	exon2 / exon11	5'>3' / 5'>3'	4.057748	N	N	N	N	N	mean coverage below Barnacle read-support threshold
fusion0	EFCAB6 / GNAS	exon3 / exon2	3'<5' / 3'<5'	4.120524	N	N	N	N	N	mean coverage below Barnacle read-support threshold
fusion32	NDUFA6 / PRR5	exon1 / exon3	3'<5' / 3'<5'	4.497346	N	N	N	N	N	mean coverage below Barnacle read-support threshold
fusion40	CSF2RB / RNF215	exon7 / exon1	3'<5' / 3'<5'	4.517213	N	N	N	N	Y	mean coverage below Barnacle read-support threshold
fusion89	SGSM1 / SLC9A8	exon2 / exon13	3'<5' / 5'>3'	5.646283	N	N	N	N	N	no contig assembled
fusion75	C22orf15 / JAG1	exon2 / exon4	5'>3' / 5'>3'	6.487347	N	N	N	N	Y	"contig only 78nt, no reads align to contig"
fusion98	CBFA2T2 / RP1-90G24.6	exon2 / exon2	3'<5' / 5'>3'	6.713639	N	N	N	N	N	no contig assembled
fusion63	PARVB / PES1	exon7 / exon7	5'>3' / 5'>3'	7.379388	N	N	N	N	Y	"contig only 77nt, no reads align to contig, contig has no alignments to genome"
fusion97	C20orf12 / PAX1	exon6 / exon3	5'>3' / 5'>3'	7.573419	N	N	N	N	Y	"breakpoint near edge of contig, only three reads align across breakpoint, one has a mismatch"
fusion33	IGLV2-11 / PHF20	exon2 / exon2	5'>3' / 3'<5'	8.200881	N	N	N	N	Y	"contig only 78nt, no reads align to contig; contig multi-maps to genome"
fusion91	MED15 / RALGAPA2	exon11 / exon33	5'>3' / 5'>3'	8.390313	Y	Y	Y	Y	Y	
fusion24	JOSD1 / TRMT2A	exon1 / exon1	5'>3' / 3'<5'	8.651535	N	N	N	N	N	"contig only 78nt, no reads align to contig"
fusion71	MED15 / TFIP11	exon5 / exon3	3'<5' / 3'<5'	9.56151	N	N	N	N	Y	"contig only 77nt, no reads align to contig, contig has poor alignments to genome"
fusion57	CDC45L / RALY	exon3 / exon3	5'>3' / 5'>3'	9.697672	N	N	Y	Y	N	"contig only 89nt, only two reads align to contig"
fusion44	CTA-282F2.3 / MCHR1	exon2 / exon2	5'>3' / 5'>3'	10.99201	N	N	N	N	N	contig assembled together with CTA-282F2.3 / RPLP0P1 fusion resulting in complex contig-to-genome alignment topology
fusion11	KREMEN1 / RP1-199H16.6	exon6 / exon2	3'<5' / 3'<5'	12.162695	N	N	Y	Y	Y	"breakpoint near edge of contig, only three reads align across breakpoint, one has a mismatch"
fusion95	PHF20 / RP5-907D15.2	exon4 / exon3	5'>3' / 5'>3'	13.160711	N	N	N	N	Y	"contig only 81nt, only two reads align to contig, homology near breakpoint causes poor contig-to-genome alignment"
fusion48	CTA-833B7.2 / PKIG	exon2 / exon2	3'<5' / 3'<5'	13.235705	Y	Y	Y	Y	Y	
fusion84	PRR5 / XXbac-B476C20.12	exon2 / exon1	3'<5' / 5'>3'	13.307669	Y	Y	Y	Y	Y	
fusion78	RGL4 / STAU1	exon2 / exon4	5'>3' / 5'>3'	14.853343	N	N	Y	Y	Y	"contig only 89nt, only four reads align to contig, one has mismatch"
fusion2	AC000093.3 / BCAS1	exon1 / exon8	3'<5' / 3'<5'	17.183489	Y	Y	Y	Y	Y	
fusion13	BCAS1 / HM13	exon6 / exon1	5'>3' / 5'>3'	17.255278	N	N	Y	Y	Y	"two contigs represent event, breakpoint near edge of contigs, only four and four reads align across breakpoint, two and zero have a mismatches, BWA multi-mapping bug"
fusion46	GAL3ST1 / SFI1	exon2 / exon16	5'>3' / 5'>3'	19.847224	Y	Y	Y	Y	Y	
fusion96	FBLN1 / HM13	exon1 / exon2	5'>3' / 5'>3'	20.207211	Y	Y	Y	Y	Y	
fusion34	APOL3 / MAPK1	exon2 / exon3	5'>3' / 5'>3'	21.457917	Y	Y	Y	Y	Y	
fusion64	EIF6 / PHACTR3	exon1 / exon10	3'<5' / 3'<5'	21.459609	Y	Y	Y	Y	Y	
fusion8	IFT52 / SOX10	exon2 / exon1	3'<5' / 3'<5'	24.424437	Y	Y	Y	Y	Y	
fusion67	CTA-211A9.5 / RP5-897D18.1	exon3 / exon1	3'<5' / 3'<5'	24.483889	Y	Y	Y	Y	N	
fusion6	KB-7G2.5 / OPRL1	exon2 / exon6	5'>3' / 5'>3'	29.835903	N	Y	N	Y	Y	contig multi-maps to genome
fusion37	EPB41L1 / RP5-859D4.3	exon6 / exon3	3'<5' / 3'<5'	29.957634	Y	Y	Y	Y	Y	
fusion79	DUSP18 / ITCH	exon2 / exon2	3'<5' / 5'>3'	30.92327	Y	Y	Y	Y	Y	
fusion18	CSNK1E / MKL1	exon5 / exon6	5'>3' / 5'>3'	31.160718	Y	Y	Y	Y	N	
fusion73	RP3-477O4.14 / TBC1D20	pos114 / pos4129	5'>3' / 3'<5'	33.032239	Y	Y	Y	Y	N	
fusion85	C22orf42 / RBBP9	pos520 / pos94	3'<5' / 3'<5'	38.75822	Y	Y	Y	Y	N	
fusion66	PICK1 / RP11-416N4.4	exon1 / exon2	3'<5' / 3'<5'	40.591662	Y	Y	Y	Y	Y	
fusion15	GNRH2 / SIRPB1	exon2 / exon4	3'<5' / 5'>3'	41.163383	N	N	N	N	N	missassembled as GNRH2 / SIRPA (only three bases different)
fusion43	C20orf26 / LAMA5	exon2 / exon1	3'<5' / 5'>3'	42.524421	Y	Y	Y	Y	Y	
fusion12	AC002073.2 / WFDC2	exon1 / exon3	3'<5' / 3'<5'	42.789579	N	Y	N	Y	Y	contig multi-maps to genome
fusion29	C22orf13 / RP5-977B1.7	exon2 / exon2	3'<5' / 3'<5'	44.567892	N	N	Y	Y	Y	"contig only 73nt, no reads align to contig"
fusion26	RBM9 / SMTN	exon7 / exon10	5'>3' / 5'>3'	47.660717	Y	Y	Y	Y	Y	
fusion23	RBM12 / RP3-449O17.1	exon2 / exon2	3'<5' / 5'>3'	60.828951	Y	Y	Y	Y	Y	
fusion45	ARSA / C22orf36	exon9 / exon2	3'<5' / 3'<5'	62.355273	Y	Y	Y	Y	Y	
fusion68	HM13 / JOSD1	pos248 / pos501	3'<5' / 3'<5'	71.255014	Y	Y	Y	Y	Y	
fusion5	CPT1B / ZFP64	exon2 / exon4	5'>3' / 5'>3'	76.948993	Y	Y	Y	Y	Y	
fusion28	BCR / RTN4R	exon17 / exon1	5'>3' / 5'>3'	82.095083	N	Y	N	Y	Y	contig multi-maps to genome
fusion86	SEC14L2 / WFDC13	exon6 / exon2	3'<5' / 3'<5'	88.549904	Y	Y	Y	Y	Y	
fusion53	RP4-715N11.2 / WFDC10B	exon1 / exon3	3'<5' / 3'<5'	89.67957	Y	Y	Y	Y	Y	
fusion19	CBX7 / YPEL1	exon1 / exon3	5'>3' / 5'>3'	91.54125	Y	Y	Y	Y	Y	
fusion42	CELSR1 / XXbac-B444P24.10	exon2 / exon4	3'<5' / 5'>3'	101.993345	Y	Y	Y	Y	Y	
fusion70	C22orf34 / JOSD1	exon1 / exon1	5'>3' / 3'<5'	103.456682	Y	Y	Y	Y	Y	
fusion14	ADSL / RBM9	exon3 / exon3	3'<5' / 5'>3'	119.440071	Y	Y	Y	Y	N	
fusion4	HNF4A / RP1-269M15.3	exon5 / exon1	3'<5' / 3'<5'	120.637304	N	N	N	N	N	"no contig assembled, breakpoint near edge of transcript"
fusion92	CHKB / GNAS	exon4 / exon2	5'>3' / 5'>3'	121.877732	Y	Y	Y	Y	Y	
fusion36	CTA-282F2.3 / RPLP0P1	exon3 / exon2	5'>3' / 5'>3'	125.055275	N	N	N	N	Y	contig assembled together with CTA-282F2.3 / MCHR1 fusion resulting in complex contig-to-genome alignment topology
fusion3	BCL2L1 / XXbac-B33L19.3	exon2 / exon2	5'>3' / 5'>3'	128.103672	N	Y	N	Y	N	contig multi-maps to genome
fusion16	RP5-1043L13.1 / SLC23A2	exon3 / exon1	3'<5' / 3'<5'	133.964752	Y	Y	Y	Y	N	
fusion59	NECAB3 / OGFR	exon7 / exon4	3'<5' / 3'<5'	141.117372	N	N	N	N	Y	homology near breakpoint causes poor contig-to-genome alignment
fusion83	GGT1 / TPST2	exon6 / exon3	3'<5' / 5'>3'	144.773799	Y	Y	Y	Y	N	
fusion61	DRG1 / MPPED1	pos195 / pos898	5'>3' / 3'<5'	168.998169	Y	Y	Y	Y	N	
fusion52	HMOX1 / STAU1	exon2 / exon11	5'>3' / 5'>3'	172.267221	Y	Y	Y	Y	Y	
fusion74	C20orf123 / MIAT	exon1 / exon2	5'>3' / 3'<5'	182.016313	Y	Y	Y	Y	Y	
fusion21	LSM14B / ZHX3	exon2 / exon2	5'>3' / 5'>3'	182.230356	Y	Y	Y	Y	Y	
fusion27	C20orf112 / GDAP1L1	exon2 / exon3	3'<5' / 3'<5'	182.399957	Y	Y	Y	Y	Y	
fusion50	MACROD2 / MB	exon2 / exon3	3'<5' / 3'<5'	188.072371	Y	Y	Y	Y	Y	
fusion87	DHX35 / PLCB4	exon5 / exon1	3'<5' / 5'>3'	194.513721	Y	Y	Y	Y	Y	
fusion62	MICAL3 / NSFL1C	exon3 / exon2	5'>3' / 5'>3'	223.919931	Y	Y	Y	Y	Y	
fusion54	BPIL2 / CCDC157	pos69 / pos98	3'<5' / 3'<5'	231.599119	Y	Y	Y	Y	N	
fusion39	TNNC2 / TSHZ2	exon3 / exon2	3'<5' / 3'<5'	258.802765	Y	Y	Y	Y	Y	
fusion51	OGFR / RP11-218C14.2	exon4 / exon2	5'>3' / 5'>3'	284.538662	Y	Y	Y	Y	Y	
fusion1	RP4-718J7.4 / TTLL9	exon2 / exon14	5'>3' / 3'<5'	289.202119	Y	Y	Y	Y	N	
fusion7	RP5-1069P2.4 / THAP7	exon1 / exon2	3'<5' / 5'>3'	301.379014	Y	Y	Y	Y	Y	
fusion38	AP000344.1 / RP5-907D15.2	exon3 / exon2	3'<5' / 5'>3'	317.789104	Y	Y	Y	Y	Y	
fusion49	CPT1B / SLC13A3	exon2 / exon4	5'>3' / 5'>3'	356.276111	Y	Y	Y	Y	N	
fusion10	GPCPD1 / SMARCB1	exon1 / exon1	5'>3' / 3'<5'	367.444289	Y	Y	Y	Y	Y	
fusion58	CTA-282F2.3 / POLR3H	exon1 / exon3	3'<5' / 5'>3'	393.503324	Y	Y	Y	Y	N	
fusion56	ARHGAP8 / RP5-1187M17.7	exon3 / exon1	5'>3' / 5'>3'	491.781384	Y	Y	Y	Y	Y	
fusion81	AP000351.3 / LZTR1	exon2 / exon5	5'>3' / 5'>3'	545.551721	N	Y	N	Y	Y	contig multi-maps to genome
fusion69	CSTL1 / RP1-66N13.3	exon1 / exon2	5'>3' / 5'>3'	611.248526	Y	Y	Y	Y	Y	
fusion17	ASCC2 / FAM110A	exon1 / exon2	5'>3' / 5'>3'	747.505603	Y	Y	Y	Y	Y	
fusion90	ADAM33 / COL9A3	exon1 / exon27	3'<5' / 5'>3'	1634.832111	Y	Y	Y	Y	Y